Hi Glen,
Thanks for pointing out this possibility. Robin and Mark, thank you
for the continue support.
I tried an AIP mets and get following error messages in my log -
ERROR 2012-03-29 16:33:11.068 [http-8080-3]
(FedoraAPIMBindingSOAPHTTPImpl) Error ingesting
org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO stream was
bad : Malformed URL: bitstream_613090.jpeg
at
org
.fcrepo
.server
.storage
.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:
258) [fcrepo-server-3.4.2.jar:na]
at
org
.fcrepo
.server
.storage
.translation.DOTranslatorImpl.deserialize(DOTranslatorImpl.java:75)
[fcrepo-server-3.4.2.jar:na]
at
org
.fcrepo
.server
.storage
.translation.DOTranslatorModule.deserialize(DOTranslatorModule.java:
126) [fcrepo-server-3.4.2.jar:na]
at
org
.fcrepo
.server.storage.DefaultDOManager.getIngestWriter(DefaultDOManager.java:
802) [fcrepo-server-3.4.2.jar:na]
at
org
.fcrepo
.server.management.DefaultManagement.ingest(DefaultManagement.java:
160) [fcrepo-server-3.4.2.jar:na]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [na:
1.6.0_23]
at
sun
.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
57) [na:1.6.0_23]
at
sun
.reflect
.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:
43) [na:1.6.0_23]
at java.lang.reflect.Method.invoke(Method.java:616) [na:1.6.0_23]
at
org
.fcrepo
.server
.messaging
.NotificationInvocationHandler
.invoke(NotificationInvocationHandler.java:68) [fcrepo-
server-3.4.2.jar:na]
at $Proxy4.ingest(Unknown Source) [na:na]
at
org
.fcrepo
.server.management.ManagementModule.ingest(ManagementModule.java:354)
[fcrepo-server-3.4.2.jar:na]
at
org
.fcrepo
.server
.management
.FedoraAPIMBindingSOAPHTTPImpl
.ingest(FedoraAPIMBindingSOAPHTTPImpl.java:83) [fcrepo-
server-3.4.2.jar:na]
at
org
.fcrepo
.server
.management
.FedoraAPIMBindingSOAPHTTPSkeleton
.ingest(FedoraAPIMBindingSOAPHTTPSkeleton.java:355) [fcrepo-
common-3.4.2.jar:na]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [na:
1.6.0_23]
at
sun
.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
57) [na:1.6.0_23]
at
sun
.reflect
.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:
43) [na:1.6.0_23]
at java.lang.reflect.Method.invoke(Method.java:616) [na:1.6.0_23]
at
org
.apache.axis.providers.java.RPCProvider.invokeMethod(RPCProvider.java:
397) [axis-1.3-PATCHED.jar:na]
at
org
.apache
.axis.providers.java.RPCProvider.processMessage(RPCProvider.java:186)
[axis-1.3-PATCHED.jar:na]
at
org.apache.axis.providers.java.JavaProvider.invoke(JavaProvider.java:
323) [axis-1.3-PATCHED.jar:na]
at
org
.apache
.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
[axis-1.3-PATCHED.jar:na]
at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
[axis-1.3-PATCHED.jar:na]
at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83) [axis-1.3-
PATCHED.jar:na]
at org.apache.axis.handlers.soap.SOAPService.invoke(SOAPService.java:
453) [axis-1.3-PATCHED.jar:na]
at org.apache.axis.server.AxisServer.invoke(AxisServer.java:281)
[axis-1.3-PATCHED.jar:na]
at org.apache.axis.transport.http.AxisServlet.doPost(AxisServlet.java:
699) [axis-1.3-PATCHED.jar:na]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
[servlet-api.jar:na]
at
org
.apache
.axis.transport.http.AxisServletBase.service(AxisServletBase.java:327)
[axis-1.3-PATCHED.jar:na]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
[servlet-api.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
290) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.fcrepo
.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:
235) [fcrepo-server-3.4.2.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
235) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.fcrepo
.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:
235) [fcrepo-server-3.4.2.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
235) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.fcrepo
.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:
235) [fcrepo-server-3.4.2.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
235) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.fcrepo
.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:
235) [fcrepo-server-3.4.2.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
235) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.fcrepo
.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:
235) [fcrepo-server-3.4.2.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
235) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.fcrepo
.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:
235) [fcrepo-server-3.4.2.jar:na]
at
org
.apache
.catalina
.core
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:
235) [catalina.jar:na]
at
org
.apache
.catalina
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
[catalina.jar:na]
at
org
.apache
.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:
233) [catalina.jar:na]
at
org
.apache
.catalina.core.StandardContextValve.invoke(StandardContextValve.java:
191) [catalina.jar:na]
at
org
.apache
.catalina
.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:525)
[catalina.jar:na]
at
org
.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:
128) [catalina.jar:na]
at
org
.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:
102) [catalina.jar:na]
at
org
.apache
.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:
109) [catalina.jar:na]
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:
293) [catalina.jar:na]
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:
849) [tomcat-coyote.jar:na]
at org.apache.coyote.http11.Http11Protocol
$Http11ConnectionHandler.process(Http11Protocol.java:583) [tomcat-
coyote.jar:na]
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:
454) [tomcat-coyote.jar:na]
at java.lang.Thread.run(Thread.java:679) [na:1.6.0_23]
Caused by: org.xml.sax.SAXException: Malformed URL:
bitstream_613090.jpeg
at
org
.fcrepo
.server
.storage
.translation.FOXMLDODeserializer.startElement(FOXMLDODeserializer.java:
453) [fcrepo-server-3.4.2.jar:na]
at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown
Source) [xercesImpl-2.9.1.jar:na]
at
org
.apache.xerces.parsers.AbstractXMLDocumentParser.emptyElement(Unknown
Source) [xercesImpl-2.9.1.jar:na]
at
org
.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown
Source) [xercesImpl-2.9.1.jar:na]
at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl
$FragmentContentDispatcher.dispatch(Unknown Source)
[xercesImpl-2.9.1.jar:na]
at
org
.apache
.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
Source) [xercesImpl-2.9.1.jar:na]
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
[xercesImpl-2.9.1.jar:na]
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
[xercesImpl-2.9.1.jar:na]
at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
[xercesImpl-2.9.1.jar:na]
at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
[xercesImpl-2.9.1.jar:na]
at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown
Source) [xercesImpl-2.9.1.jar:na]
at org.apache.xerces.jaxp.SAXParserImpl.parse(Unknown Source)
[xercesImpl-2.9.1.jar:na]
at javax.xml.parsers.SAXParser.parse(SAXParser.java:195) [na:1.6.0_23]
at
org
.fcrepo
.server
.storage
.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:
253) [fcrepo-server-3.4.2.jar:na]
... 60 common frames omitted
I suspect that fedora SWORD is expecting a URL link to the file
instead of a local file name. However, if that's the case, should be a
easy fix in the code.
Thanks,
Ying
On Mar 29, 2012, at 11:22 AM, Glen Robson wrote:
> Hi Robin and Ying,
>
> I've just looked through the sword-fedora implementation (for SWORD
> version 1.2) and it looks like if you submit the mime-type as text/
> xml and the packaging as 'http://www.loc.gov/METS/' it will extract
> any METS dmdSecs and store them as Fedora datastreams then go
> through the file section and add those as datastreams to an object
> in Fedora. I'm not sure how that would look in Islandora but if you
> have a METS document containing MODS and links to files you should
> get them pulled into a Fedora object.
>
> When I developed the METS handler for Fedora SWORD it was meant to
> handle a generic METS documents rather than any specific profile but
> I'm afraid I don't know much about the METSDSpaceSIP so I'm not
> quite sure whats missing.
>
> Hope that helps.
>
> Glen
>
> On 29 Mar 2012, at 15:56, Robin Taylor wrote:
>> Hi Ying,
>>
>> So the fact that the ServiceDocument contains...
>>
>> <sword:acceptPackaging q="0.9">http://purl.org/net/sword-types/METSDSpaceSIP
>> </sword:acceptPackaging>
>>
>> ...means that in theory it should be happy with a Mets package with
>> Mods
>> metadata. In practice I'll bet that the Fedora Sword implementation
>> expects SWAP metadata. I don't know if there are any Fedora experts
>> listening in who could confirm ?
>>
>> However, Mark makes a good point that SWORD may not be the best
>> vehicle
>> for a bulk transfer of data. You might be best to find out what tools
>> Fedora has for bulk import and aim to export and transform your
>> DSpace
>> data into the required format.
>>
>> Cheers, Robin.
>>
>>
>>
>> On 28/03/12 15:47, Ying Jin wrote:
>>> Hi Robin,
>>>
>>> Thanks for your reply. Here is the service document. I am running
>>> SWORD-Fedora 1.2 -
>>>
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> ====================================================================
>>> <?xml version="1.0" encoding="UTF-8"?>
>>> <app:service xmlns:atom="http://www.w3.org/2005/Atom";
>>> xmlns:app="http://www.w3.org/2007/app
>>> " xmlns:sword="http://purl.org/net/sword/";
>>> xmlns:dcterms="http://purl.org/dc/terms/
>>> ">
>>> <sword:version>1.3</sword:version>
>>> <sword:verbose>true</sword:verbose>
>>> <sword:noOp>true</sword:noOp>
>>> <app:workspace>
>>> <atom:title type="text">Fedora SWORD Workspace</atom:title>
>>> <app:collection href="http://localhost:8080/sword/
>>> collection:open">
>>> <atom:title type="text">Open Collection</atom:title>
>>> <app:accept>text/xml</app:accept>
>>> <app:accept>application/zip</app:accept>
>>> <app:accept>application/x-zip-compressed</app:accept>
>>> <app:accept>application/atom+xml</app:accept>
>>> <app:accept>image/gif</app:accept>
>>> <app:accept>image/jpeg</app:accept>
>>> <app:accept>image/jpg</app:accept>
>>> <app:accept>application/pdf</app:accept>
>>> <sword:acceptPackaging
>>> q="0.9">http://purl.org/net/sword-types/METSDSpaceSIP
>>> </sword:acceptPackaging>
>>> <sword:acceptPackaging q="0.9">http://www.loc.gov/METS/</
>>> sword:acceptPackaging>
>>> <sword:collectionPolicy>This collection accepts any deposit
>>> from anyone</sword:collectionPolicy>
>>> <dcterms:abstract>This is a collection of objects which can
>>> be freely deposited to. This is aviable for the SWORD test project</
>>> dcterms:abstract>
>>> <sword:mediation>true</sword:mediation>
>>> <sword:treatment>Preservation actions may occur on submited
>>> deposits</sword:treatment>
>>> </app:collection>
>>> <app:collection href="http://localhost:8080/sword/geography-collection
>>> ">
>>> <atom:title type="text">Geography Collection</atom:title>
>>> <app:accept>application/zip</app:accept>
>>> <sword:acceptPackaging
>>> q="0.9">http://purl.org/net/sword-types/METSDSpaceSIP
>>> </sword:acceptPackaging>
>>> <sword:collectionPolicy>This collection accepts any deposit
>>> </sword:collectionPolicy>
>>> <dcterms:abstract>This is a nested collection of geography
>>> objects</dcterms:abstract>
>>>
>>> <sword:service>http://localhost:8080/sword/servicedocument/geography.xml
>>> </sword:service>
>>> <sword:mediation>true</sword:mediation>
>>> <sword:treatment>Preservation actions may occur on submited
>>> deposits</sword:treatment>
>>> </app:collection>
>>> </app:workspace>
>>> </app:service>
>>>
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> =
>>> ====================================================================
>>>
>>> It shows METSDSpaceSIP as accepting package. However, it doesn't
>>> work.
>>>
>>> Best,
>>> Ying
>>>
>>> On Mar 28, 2012, at 4:35 AM, Robin Taylor wrote:
>>>
>>>> Hi Ying,
>>>>
>>>> If you send a request to the Fedora Sword Server for a Sword
>>>> ServiceDocument it should tell you what package formats it
>>>> supports.
>>>> Would it be possible to do so and post the results here ?
>>>>
>>>> Thanks, Robin.
>>>>
>>>>
>>>> On 27/03/12 21:22, Ying Jin wrote:
>>>>> Hi,
>>>>>
>>>>> I'm working on our DSpace repository and trying to migrate items
>>>>> from
>>>>> DSpace to Fedora (we are going to use Islandora). It looks like
>>>>> SWORD
>>>>> might be a good approach. Here is the question from my testing
>>>>> migration -
>>>>>
>>>>> I exported an item using DSpace packager in METS format, and
>>>>> then use
>>>>> Fedora Sword module to import the item to Fedora.
>>>>>
>>>>> First, I used METSDSpaceSIP packaging, and the ingested item
>>>>> shows a
>>>>> zip file only.
>>>>> Then I tried METS packaging and only content files are uploaded.
>>>>> Obviously, it can't understand dspace mets.
>>>>>
>>>>> I think METSDSpaceSIP packaging is the right way to go but it
>>>>> doesn't
>>>>> seem to work properly. Is there anything I may need to setup for
>>>>> having this work?
>>>>>
>>>>> Thanks any suggestions and helps,
>>>>> Ying
>>>>>
>>>>> -------------------
>>>>> CDS@Rice University
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> This SF email is sponsosred by:
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>>>>> _______________________________________________
>>>>> sword-app-tech mailing list
>>>>> [email protected]
>>>>> https://lists.sourceforge.net/lists/listinfo/sword-app-tech
>>>>
>>>>
>>>>
>>>> --
>>>> The University of Edinburgh is a charitable body, registered in
>>>> Scotland, with registration number SC005336.
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> This SF email is sponsosred by:
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>>>> _______________________________________________
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>>>>
>>
>>
>> --
>> The University of Edinburgh is a charitable body, registered in
>> Scotland, with registration number SC005336.
>>
>>
>> ------------------------------------------------------------------------------
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>
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