Edward Kawas wrote: > Hi Michael, > > On my machine, I cannot confirm that it takes several minutes. I am however > using a patched version of the plugin (from the cvs t2-activities). The > results for me came in under 30 seconds (complete workflow). > > Since t2 came out, I have made substantial edits to the original t2 port of > the biomoby plugin. > Yes, thanks for your fixes Eddie. I'm going to have a look at releasing an update for it.
Stuart > Eddie > > -----Original Message----- > From: Michael Gerlich [mailto:[email protected]] > Sent: February-11-09 3:38 AM > To: [email protected] > Subject: [Taverna-hackers] Parsing of Biomoby service > > Hello all, > > I encountered a strange behavior when using the Biomoby parsing option in > T2. > When adding a parser to a Biomoby service output to view only specific > entries, it takes a lot of time (several minutes) before this action is > completed. This might lead to errors in a workflow if the result of the > parser is further used. I have another workflow where these results are > input to a beanshell - trying to run this workflow led to an error because > of this lazy parsing. > > I tried to circumvent this parsing with the help of the XPath local worker > which works pretty fine. Anyway, do you know why the Biomoby parser takes so > long? > > I attached a sample workflow to show this behavior. > > > I looked into your list of issues if this was already mentioned (guess > [T2-199] <http://www.mygrid.org.uk/dev/issues/browse/T2-199>) - when I want > to change the iteration strategy, the window which opens doesn't show all > buttons - I have to manually resize the window. This was confusing when I > tried to switch from cross to dot and none of my drag&drop actions worked. > > Is it possible to edit the MIME type of workflow outputs? The result of a > Biomoby service is always in XML, but T2 does only show plain text, whereas > T1 had several "show as..." options. > > > Kind Regards, > > Michael > > > ------------------------------------------------------------------------------ > Create and Deploy Rich Internet Apps outside the browser with Adobe(R)AIR(TM) > software. With Adobe AIR, Ajax developers can use existing skills and code to > build responsive, highly engaging applications that combine the power of local > resources and data with the reach of the web. Download the Adobe AIR SDK and > Ajax docs to start building applications today-http://p.sf.net/sfu/adobe-com > _______________________________________________ > taverna-hackers mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/taverna-hackers > Developers Guide: http://www.mygrid.org.uk/usermanual1.7/dev_guide.html > FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq > ------------------------------------------------------------------------------ _______________________________________________ taverna-hackers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/taverna-hackers Developers Guide: http://www.mygrid.org.uk/usermanual1.7/dev_guide.html FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
