Hi.
I am trying to translate t1 worklows into t2 workflows.
But I encountered problems with platform initialization.
My code is:
--------------------
package org.genesilico.t2workflow.test;
import
net.sf.taverna.t2.platform.spring.RavenAwareClassPathXmlApplicationContext;
import net.sf.taverna.t2.platform.taverna.TavernaBaseProfile;
import org.springframework.context.ApplicationContext;
public class Test1 {
public static void main(String[] args) {
connector.addActivityTypesToDatabase(connector.prepareActivitytypes());
Map<T2ActivityType,List<T2ActivityParameterType>> activityTypesMap
= connector. getActivityTypesFromDatabase();
ApplicationContext context = new
RavenAwareClassPathXmlApplicationContext( "context.xml");
TavernaBaseProfile profile = new TavernaBaseProfile(context);
}
}
----------------------
Whwn I run it, I get:
--------------------------------------
Exception in thread "main"
org.springframework.beans.factory.BeanCreationException: Error creating
bean with name 't2.enactor.workflowParser' defined in class path
resource [context-parts/platform-basic-profile.xml]: Error setting
property values; nested exception is
org.springframework.beans.PropertyBatchUpdateException; nested
PropertyAccessExceptions (1) are:
PropertyAccessException 1:
org.springframework.beans.MethodInvocationException: Property
'pluginManager' threw exception; nested exception is
java.lang.NoSuchMethodError:
net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializerImpl.<init>(Lnet/sf/taverna/t2/platform/plugin/PluginManager;)V
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1277)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1008)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:470)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
at java.security.AccessController.doPrivileged(Native Method)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:220)
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381)
at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:83)
at
net.sf.taverna.t2.platform.spring.RavenAwareClassPathXmlApplicationContext.<init>(RavenAwareClassPathXmlApplicationContext.java:41)
at org.genesilico.t2workflow.test.Test1.main(Test1.java:29)
Caused by: org.springframework.beans.PropertyBatchUpdateException;
nested PropertyAccessExceptions (1) are:
PropertyAccessException 1:
org.springframework.beans.MethodInvocationException: Property
'pluginManager' threw exception; nested exception is
java.lang.NoSuchMethodError:
net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializerImpl.<init>(Lnet/sf/taverna/t2/platform/plugin/PluginManager;)V
at
org.springframework.beans.AbstractPropertyAccessor.setPropertyValues(AbstractPropertyAccessor.java:104)
at
org.springframework.beans.AbstractPropertyAccessor.setPropertyValues(AbstractPropertyAccessor.java:59)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1274)
... 17 more
-------------------------------------
In case it is a dependency proble, I attach my pom.xml file
Jerzy Orlowski
<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";>
<modelVersion>4.0.0</modelVersion>
<groupId>workflowmaker_t2_1</groupId>
<artifactId>workflowmaker_t2_1</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>pom</packaging>
<properties>
<!-- Common version numbers of dependencies -->
<depT2core>0.4-SNAPSHOT</depT2core>
<depTaverna>1.7.2-SNAPSHOT</depTaverna>
<depRaven>1.8</depRaven>
<depLog4j>1.2.13</depLog4j>
<depCommonsIO>1.3</depCommonsIO>
<depCommonsCLI>1.0</depCommonsCLI>
<depJdom>1.0</depJdom>
<t2.platform.version>0.1</t2.platform.version>
<t2.reference.version>0.1</t2.reference.version>
<t2.core.version>0.4-SNAPSHOT</t2.core.version>
<t2.activities.version>0.4-SNAPSHOT</t2.activities.version>
<t2.io.version>0.3</t2.io.version>
<t2.spidiscovery.version>0.3</t2.spidiscovery.version>
<raven.version>1.8</raven.version>
<t2.security.version>0.1</t2.security.version>
<taverna.version>1.7.2-SNAPSHOT</taverna.version>
</properties>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.5</source>
<target>1.5</target>
</configuration>
</plugin>
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<skip>false</skip>
<systemProperties>
<property>
<name>java.awt.headless</name>
<value>true</value>
</property>
</systemProperties>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>jar</goal>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<modules>
<module>integration-testing-common</module>
<module>dataflow-invocation-testing</module>
<module>dataflow-serialization-testing</module>
<module>activity-testing</module>
</modules>
<repositories>
<repository>
<releases />
<snapshots>
<enabled>false</enabled>
</snapshots>
<id>cyclonic</id>
<name>Cyclonic.org repository</name>
<url>http://www.cyclonic.org/t2platform/repository</url>
</repository>
<repository>
<releases />
<snapshots>
<enabled>false</enabled>
</snapshots>
<id>mygrid-repository</id>
<name>myGrid Repository</name>
<url>http://www.mygrid.org.uk/maven/repository</url>
</repository>
<repository>
<releases />
<snapshots>
<enabled>false</enabled>
</snapshots>
<id>mygrid-mirror</id>
<name>myGrid maven proxy server</name>
<url>http://www.mygrid.org.uk/maven/repo1</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>platform-taverna-api</artifactId>
<version>p0.1b1</version>
<exclusions>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>compatibility-api</artifactId>
<version>${t2.core.version}</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>compatibility-impl</artifactId>
<version>${t2.core.version}</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>workflowmodel-api</artifactId>
<version>${t2.core.version}</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>workflowmodel-impl</artifactId>
<version>${t2.core.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.4</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>platform</artifactId>
<version>${t2.platform.version}</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>t2reference-api</artifactId>
<version>${t2.reference.version}</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>t2reference-impl</artifactId>
<version>${t2.reference.version}</version>
</dependency>
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>t2reference-core-extensions</artifactId>
<version>${t2.reference.version}</version>
</dependency>
</dependencies>
</project>------------------------------------------------------------------------------
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