I found out that this is caused by adding
<dependency>
<groupId>net.sf.taverna.t2</groupId>
<artifactId>compatibility-api</artifactId>
<version>0.4-SNAPSHOT</version>
</dependency>
To pom.xml file
Jerzy Orlowski
Jerzy Orlowski wrote:
> Hi.
>
> I am trying to translate t1 worklows into t2 workflows.
> But I encountered problems with platform initialization.
>
> My code is:
> --------------------
>
> package org.genesilico.t2workflow.test;
>
>
> import
> net.sf.taverna.t2.platform.spring.RavenAwareClassPathXmlApplicationContext;
> import net.sf.taverna.t2.platform.taverna.TavernaBaseProfile;
> import org.springframework.context.ApplicationContext;
>
> public class Test1 {
> public static void main(String[] args) {
> connector.addActivityTypesToDatabase(connector.prepareActivitytypes());
> Map<T2ActivityType,List<T2ActivityParameterType>> activityTypesMap =
> connector. getActivityTypesFromDatabase();
> ApplicationContext context = new
> RavenAwareClassPathXmlApplicationContext( "context.xml");
> TavernaBaseProfile profile = new TavernaBaseProfile(context);
> }
> }
> ----------------------
>
> Whwn I run it, I get:
>
> --------------------------------------
> Exception in thread "main"
> org.springframework.beans.factory.BeanCreationException: Error creating
> bean with name 't2.enactor.workflowParser' defined in class path
> resource [context-parts/platform-basic-profile.xml]: Error setting
> property values; nested exception is
> org.springframework.beans.PropertyBatchUpdateException; nested
> PropertyAccessExceptions (1) are:
> PropertyAccessException 1:
> org.springframework.beans.MethodInvocationException: Property
> 'pluginManager' threw exception; nested exception is
> java.lang.NoSuchMethodError:
> net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializerImpl.<init>(Lnet/sf/taverna/t2/platform/plugin/PluginManager;)V
>
>
> at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1277)
>
>
> at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1008)
>
>
> at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:470)
>
>
> at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
>
>
> at java.security.AccessController.doPrivileged(Native Method)
> at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
>
>
> at
> org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
>
>
> at
> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:220)
>
>
> at
> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
>
>
> at
> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
>
>
> at
> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
>
>
> at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
>
>
> at
> org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729)
>
>
> at
> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381)
>
>
> at
> org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
>
>
> at
> org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:83)
>
>
> at
> net.sf.taverna.t2.platform.spring.RavenAwareClassPathXmlApplicationContext.<init>(RavenAwareClassPathXmlApplicationContext.java:41)
>
>
> at org.genesilico.t2workflow.test.Test1.main(Test1.java:29)
> Caused by: org.springframework.beans.PropertyBatchUpdateException;
> nested PropertyAccessExceptions (1) are:
> PropertyAccessException 1:
> org.springframework.beans.MethodInvocationException: Property
> 'pluginManager' threw exception; nested exception is
> java.lang.NoSuchMethodError:
> net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializerImpl.<init>(Lnet/sf/taverna/t2/platform/plugin/PluginManager;)V
>
>
> at
> org.springframework.beans.AbstractPropertyAccessor.setPropertyValues(AbstractPropertyAccessor.java:104)
>
>
> at
> org.springframework.beans.AbstractPropertyAccessor.setPropertyValues(AbstractPropertyAccessor.java:59)
>
>
> at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1274)
>
>
> ... 17 more
> -------------------------------------
>
>
> In case it is a dependency proble, I attach my pom.xml file
>
> Jerzy Orlowski
>
>
> ------------------------------------------------------------------------
>
> ------------------------------------------------------------------------------
> Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA
> -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise
> -Strategies to boost innovation and cut costs with open source participation
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> http://p.sf.net/sfu/XcvMzF8H
>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> taverna-hackers mailing list
> [email protected]
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> Developers Guide: http://www.mygrid.org.uk/usermanual1.7/dev_guide.html
> FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
------------------------------------------------------------------------------
Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA
-OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise
-Strategies to boost innovation and cut costs with open source participation
-Receive a $600 discount off the registration fee with the source code: SFAD
http://p.sf.net/sfu/XcvMzF8H
_______________________________________________
taverna-hackers mailing list
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Developers Guide: http://www.mygrid.org.uk/usermanual1.7/dev_guide.html
FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
