Thanks a lot, Stian. Please see my reply inline. Stian Soiland-Reyes wrote: > On Tue, May 5, 2009 at 09:44, Stian Soiland-Reyes > <[email protected]> wrote: > >> On Mon, May 4, 2009 at 19:40, Wei Tan <[email protected]> wrote: >> >>> Would you update us about the progress regarding this bug? >>> >> Hi, I've noted this as >> http://www.mygrid.org.uk/dev/issues/browse/T2-531 and I'm >> investigating it now. >> > > See new comments: > > Resolved by changing LiteralBodyBuilder.java:111 to: > > if (NS_XSI.equals(node.getNamespaceURI()) && > TYPE.equals(node.getLocalName())) { > > The old version did node.getNamespaceURI().equals() - which would give > an NPE if no namespace is set. > > However, the attached workflow now gives: > > ERROR 2009-05-05 15:24:30,819 > (net.sf.taverna.t2.activities.wsdl.WSDLActivity:301) - Error invoking > WSDL service performAnalysis > AxisFault > faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException > faultSubcode: > faultString: java.lang.NullPointerException > > > This seems like a server-side error (from org.genepattern) from the > performAnalysis method in the processor called "preProcessTestData". > I once saw similar error when I invoke preprocessing service so you might be right. > The fix should make it into the next nightly build. > Let me check and re-run the workflow after I get the next nightly build (the May 06 one, right?) > > Your workflow took quite a bit of time to run.. :-) > Yeah, I spent quite a lot of time writing and debugging it and from that you know it make some sense to provide a checkpointing tool! :-)
Best regards, Wei -- Wei Tan, Ph.D. Computation Institute the University of Chicago|Argonne National Laboratory http://www.mcs.anl.gov/~wtan ------------------------------------------------------------------------------ The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your production scanning environment may not be a perfect world - but thanks to Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700 Series Scanner you'll get full speed at 300 dpi even with all image processing features enabled. http://p.sf.net/sfu/kodak-com _______________________________________________ taverna-hackers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/taverna-hackers Developers Guide: http://www.mygrid.org.uk/usermanual1.7/dev_guide.html FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
