On Tue, 28 Jul 2009 14:51:38 +0200, Alan Williams <[email protected]> wrote:
> Falko Krause wrote: >> Hi there, > > Hello, > >> I just got introduced to Taverna and have some problems to report. >> >> My current setup is >> >> $ cat /etc/issue >> Ubuntu 9.04 \n \l >> >> $ java -version >> java version "1.6.0_13" >> Java(TM) SE Runtime Environment (build 1.6.0_13-b03) >> Java HotSpot(TM) Server VM (build 11.3-b02, mixed mode) >> >> taverna-workbench-2.1.b2 >> >> >> 1) When I try to import the workflow from >> >> http://www.myexperiment.org/workflows/246 >> >> I get the following error in (I guess I tried it a couple of times so >> sorry for any duplications) >> screenshot of this error attached >> >> java.sql.SQLIntegrityConstraintViolationException: Column >> 'WFINSTANCEREF' cannot accept a NULL value. > > You get this when you just try to open the workflow? I'm checking > because I would not expect the provenance to be doing anything until you > run a workflow. sry I just realised that this may also be an error that I prodoced earlier with some other thing that I wanted to write about later on. Could be that I copied too much of the the console output. > > Were you running another workflow as well as opening the workflow from > http://www.myexperiment.org/workflows/246 ? > > [snip of provenance errors] > >> ERROR 2009-07-28 13:42:20,149 >> (org.embl.ebi.escience.scuflworkers.wsdl.WSDLBasedProcessor:140) - >> org.embl.ebi.escience.scufl.ProcessorCreationException: >> getTargetDescription: Unable to load wsdl at >> http://dbk-ed.mib.man.ac.uk:8080/YeastAffymapper/services/YeastAffymapper?wsdl > > That I can understand - although it should probably not be being logged > as an error. If Taverna is unable to load the wsdl then I would expect > to it generate a dialog and such errors. (The feedback for non-loading > files needs to be improved.) > > I can load the workflow (in both Taverna 1.7.2 and 2.1b2) but it does > not appear to run meaningfully. > > [snip] > >> 2) When I try to create a string constant (under service templates) >> Taverna crashes with a segmentation fault >> to be more excact it opens the box with the text input but if I press ok >> or cancel it will crash >> >> # >> # An unexpected error has been detected by Java Runtime Environment: >> # >> # SIGSEGV (0xb) at pc=0x983e3f7a, pid=25488, tid=2549693328 >> # >> # Java VM: Java HotSpot(TM) Server VM (11.3-b02 mixed mode linux-x86) >> # Problematic frame: >> # C [libmawt.so+0x81f7a] >> # >> # An error report file with more information is saved as: >> # >> /home/select/Download/installer/taverna-workbench-2.1.b2/hs_err_pid25488.log > > Have you still got that file? Google shows quite a number of similar > but not identical reports. > >> Best >> Falko > > Alan > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > taverna-hackers mailing list > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > Developers Guide: http://www.mygrid.org.uk/tools/developer-information -- ************************************************ * Falko Krause * Humboldt-Universität zu Berlin * Theoretical Biophysics Group * [email protected] * +49 30 2093 8381 * skype: siphone ************************************************ ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ taverna-hackers mailing list [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ Developers Guide: http://www.mygrid.org.uk/tools/developer-information
