Hi Stian,

On Fri, Dec 11, 2009 at 2:44 AM, Stian Soiland-Reyes
<[email protected]> wrote:
> Perhaps you could attach your
> C:\Users\Gott\AppData\Roaming\taverna-2.0\repository\com\github\cdktaverna\cdk-activity\0.6\cdk-activity-0.6.pom
> file? To be sure the encoding is not affected by the email systems,
> try zip-ing it first, so we can check what funny UTF entries have made
> their way in there byte by byte..

It affects a file in the 2.1b1 distribution:

WARNUNG: IO error for
C:\Users\Gott\AppData\Roaming\taverna-2.0\repository\net\sf\taverna\t2\workbench\loop-ui\0.2\loop-ui-0.2.pom
com.sun.org.apache.xerces.internal.impl.io.MalformedByteSequenceException:
Invalid byte 2 of 3-byte UTF-8 sequence.

And the CDK poms are available from:

http://github.com/egonw/cdk-taverna/blob/master/pom.xml
http://github.com/egonw/cdk-taverna/blob/master/cdk-activity/pom.xml
http://github.com/egonw/cdk-taverna/blob/master/cdk-activity-ui/pom.xml

(at least, those are the versions that Andreas checked out on his Win7
system...)

> You could also try editing the file manually and make sure there are
> no non-ASCII characters in there, for instance in developer names. (If
> they are there in UTF-8 it should have worked, though - but if your
> editor is set to use a different encoding like Latin 1 the XML file
> would generally not be valid)

We tried forced saving the file as UTF-8, and later ISO-8859-1 after
updating the XML declaration line... but that did not help either...
Xerces was still thinking it was a bad UTF-8 file...

Egon

-- 
Post-doc @ Uppsala University
Homepage: http://egonw.github.com/
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers

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