Hello Alan,
Thank you for your hint. :)
I have tried with Rserv 0.6 and it works ! (almost)
In fact, I have now an other error message :
*T2 output :
Error Trace
Processo 'Rshell' - Port 'y' : Uncaught execption while invoking
net.sf.taverna.t2.activities.rshell.rshellactiv...@1e5b5f1
CMD output :
WARN 2009-03-02 09:36:50,440
(net.sf.taverna.t2.workflowmodel.processor.dispatc
h.layers.Invoke:196) - Failed (INVOCATION) invoking
net.sf.taverna.t2.activities
.rshell.rshellactiv...@c60547 for job
net.sf.taverna.t2.workflowmodel.processor.
dispatch.events.dispatchjobev...@19e7719: Uncaught exception while invoking
net.
sf.taverna.t2.activities.rshell.rshellactiv...@c60547
java.lang.NullPointerException
at
net.sf.taverna.t2.reference.impl.ReferenceServiceImpl.renderIdentifie
r(ReferenceServiceImpl.java:350)
at
net.sf.taverna.t2.activities.rshell.RshellActivity$1.run(RshellActivi
ty.java:117)
at java.lang.Thread.run(Unknown Source)*
The message is returned when I try to use input in script. On the other
side, when I try to generate plot or other examples of documentation, but
without input, it work... :()
We can notice too, that the same work flow and R script is working in T1.
Do you have an idea ?
Thank You for your help!!
2009/2/27 Alan Williams <[email protected]>
> Germain Paimparay wrote:
> > Hello Taverna users,
> > I just downloaded T2, and I'm trying to use Rshell, but it doesn't work.
> >
> > My configuration :
> > R.2.7 with Rserv 0.6
>
> Can you try it with RServ 0.4-3? The inbuilt R support in T2 is
> slightly behind the T1 plugin.
>
> > Thank you !
> >
> > Best Regards,
> >
> > Germain
>
> Alan
>
>
>
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-OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise
-Strategies to boost innovation and cut costs with open source participation
-Receive a $600 discount off the registration fee with the source code: SFAD
http://p.sf.net/sfu/XcvMzF8H
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