halford e. (eh506) wrote: Hello,
> I am trying to use emboss services such as emma in taverna to make > workflows. I am using the operation 'run'. Does this then need to be > connected to another operation in order to get the multiple alignment > results? The inputs required for many others seems to be 'jobID', but > instead of this the output of run is 'runresponse'. > > Can anyone help me? emma is a soaplab service. Soaplab services (in Taverna) work by calling a set of underlying WSDL operations. run is one of those operations. Taverna, by default, will know about the emma service. It will be under the "Soaplab @ http://www.ebi.ac.uk/soaplab/services"; branch of the tree of services. You can add the service to the workflow from there e.g. by r-clicking on it. It looks as if you told Taverna about the WSDL that describes the operations underlying the Soaplab service e.g. by adding http://www.ebi.ac.uk/soaplab/typed/services/alignment_multiple.emma?wsdl as a new WSDL scavenger (in 1.7) or service provider (in 2.1). That is almost never a good idea. I've been looking at the BioCatalogue page, and I think it needs to be improved. For example, it should not tell you the WSDL location as that is unlikely to be of use to anyone and is confusing to the general user. So, to summarize, you need to add emma as a Soaplab service, not as a WSDL service, and your Taverna probably already knows about it. > Thankyou > > Emily Halford Alan ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
