Hi, the web services I was trying to use here are simply the EBI Typed interface WSDL of the Emboss web services listed at : http://www.ebi.ac.uk/soaplab/typed/services/list so it seemed strange that they didn't work. thank you again cheers Achille
> Hi, > > We have tried to invoke you workflow and the output of the Web service > called "run" is > > <ns2:runResponse xmlns:ns2="http://soaplab.org/typedws"; > xmlns:ns3="http://ebi.ac.uk/fproml";>[phylogeny_molecular_sequence.fproml]_797619cb.12900bfceba._90e</ns2:runResponse> > > Then you pass the above message string to the runResponse2 XML splitter > which returns an empty string "", which you them pass to > getStatus_2_jobId XML splitter to assemble the jobId message to into > getStatus_2 service but it cannot create the message as it receives an > empty string from the previous XML splitter. > > So, the problem is caused by the service run returning the xml message > in an "unwrapped" form. Our local Web service expert says that it looks > like the WSDL response is *document/literal but unwrapped* for that > service, which we do not support. Its strange because the input to that > service does appear to be wrapped. > > Ideally though the solution would be to use the Soaplab processor from > Taverna to invoke such a service rather than a generic WSDL-style > service. We tried to add the service as a SoapLab service and that > failed - maybe the reason why its not working as Soaplab could be a clue > as to why its not working as a WSDL. > > Perhaps you can get more info from your service provider about the > service you are trying to use so we can figure out why it is not > working? Can you get the url for soaplab services to use from your > service provider? > > Regards, > Alex > > P.S. > Please use 'reply to all' if you respond to this email so it goes to the > support and taverna-users mailing lists too. Other people with similar > problems that read the list can perhaps help. > > Achille Zappa wrote: >> oh yes sure, >> in effect it could be useful to have a sample input! >> you may use the alignment in this file >> >> thank you >> Achille >> >> >> >>> Hi, >>> >>> Could you give me an example input as well please, for the input >>> direct_data on XML splitter run2_sequence so I can run the workflow? >>> >>> Regards, >>> Alex >>> >>> Achille Zappa wrote: >>> >>>> HI, >>>> >>>> Attached you could find a sample of workflow that use a typed WSDL >>>> emboss web service, you can notice that the output of the runresponse >>>> splitter is empty, but this thing happens also with the other services >>>> , for example prettyplot, emma and so on. >>>> >>>> thank you >>>> regards >>>> Achille >>>> >>>> >>>> >>>> On 14/06/2010 15.51, Alexandra Nenadic wrote: >>>> >>>>> Hi, >>>>> >>>>> Could you send us the "offending" workflow so we can try and figure >>>>> out what is the problem with it? >>>>> >>>>> Regards, >>>>> Alex >>>>> >>>>> Achille Zappa wrote: >>>>> >>>>>> Hi all, >>>>>> I was trying to use the emboss web services via typed wsdls, taverna >>>>>> 2, but I have some problems with the output XML splitters: >>>>>> infact the result in the output port of the xml splitter is empty, >>>>>> for example for the "run" processor, it is not able to extract the >>>>>> jobid, it does nothing at all. >>>>>> So it's impossible to pass the jobid to the other processors like >>>>>> getStatus and getResult. I got the same result for every services, >>>>>> emma prettyplot drawgram and others. >>>>>> thank you >>>>>> regards >>>>>> Achille >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> >>>>>> ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad >>>>>> Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental >>>>>> unit. See the prize list and enter to win: >>>>>> http://p.sf.net/sfu/thinkgeek-promo >>>>>> _______________________________________________ >>>>>> taverna-users mailing list >>>>>> [email protected] >>>>>> [email protected] >>>>>> Web site: http://www.taverna.org.uk >>>>>> Mailing lists: http://www.taverna.org.uk/about/contact-us/ >>>>>> >>>>>> >>>>> ------------------------------------------------------------------------ >>>>> >>>>> >>>>> No virus found in this incoming message. >>>>> Checked by AVG - www.avg.com >>>>> Version: 9.0.829 / Virus Database: 271.1.1/2936 - Release Date: >>>>> 06/13/10 21:45:00 >>>>> >>>>> >>>>> >>> >>> >> >> >> > > > -- Achille Zappa -Phd student Bioengineering, Department of Informatics, Systems and Telematics (DIST) STIC School - University of Genoa, Genoa, Italy -Bioinformatics National Cancer Research Institute (IST) Largo Benzi 10 16132 Genoa - ITALY Tel. 010 5737288 begin_of_the_skype_highlighting 010 5737288 end_of_the_skype_highlighting ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
