In the hangout Jeremy pointed out that I should probably let people know 
about what I got to work with other commenting systems on tiddlywiki, so 
here is my progress for putting DISQUS and IntenseDebate into a tiddlywiki. 
Nether of these require access to a server so they work on tiddlyspot.The 
same applies to the muut comments 
<https://groups.google.com/forum/#!topic/tiddlywiki/jkif0vodmNY> I showed 
before.

DISQUS comments

There are two problems with using DISQUS in a tiddlywiki:

1)You can only have one comment thread per page because the script used 
contains the comment thread id and there is no way that I have found to use 
two scripts (they have the same function names).
2)There is the same problem as with the muut comments where the tiddler 
with the comment thread needs to be open when the wiki is loaded for the 
comments to be displayed (or the wiki needs to be reloaded with the 
permalink to the tiddler).

Aside from those problems the comments work as expected. Here is a site 
showing the how it works with instructions 
<http://ooktech.com/jed/ExampleWikis/DISQUS%20Demo/>.

IntenseDebate Comments:

This one is cheating because everything is put into a tiddler tagged with 
$:/tags/RawMarkup, but it is a way to get comments on a tiddlywiki without 
needing access to a server.

This one also has problems:

1)You can't put the comments inside a tiddler, so they are always at the 
very bottom of the wiki and you can't use wikitext to change anything about 
them.
2)You can only have one comment thread per wiki for the same reason as 
DISQUS, the thread id is in the script and I haven't found a way to change 
this.

This one doesn't ever require a reload. There is a demo with instructions 
here <http://ooktech.com/jed/ExampleWikis/IntenseDebate%20Demo/>.

So, in summary:

muut comments allow you to put different comment threads in different 
tiddlers, but have some problems loading. Other than the loading problems 
it works as expected.
DISQUS only allows one thread per wiki (actually per html file, but it has 
the same effect). DISQUS requires a reload when opening a tiddler with the 
comments, but reloading works better than with muut.
IntenseDebate doesn't require a reload but it also can only have one 
comment thread per wiki. Also I cheated for this one and just put the raw 
html into the wiki so the comments are always at the bottom of the page and 
can't be affected using wikitext.

None of them require access to a server and all of them are simple to set 
up.

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