I don't know how to do that for the standalone version of Tiddlywiki. But, if you want to give a try to Tiddlywiki on Node.js <http://tiddlywiki.com/#TiddlyWiki%20on%20Node.js>, you could then define inclusion of your citation wiki into each notes wiki (cf includeWikis <http://tiddlywiki.com/#TiddlyWikiFolders>). For an example of the configuration, see the tiddlywiki.info <https://github.com/Jermolene/TiddlyWiki5/blob/master/editions/prerelease/tiddlywiki.info> for the "prerelease" edition, which only has tiddlers with new functionalities, and includes the main tw5 wiki.
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