I run Bert's wondershaper (see  http://lartc.org)  for several years now 
with
the extra line:

# NTP (UDP protocol 17, port 123)
tc filter add dev $DEV parent 1:0 prio 10 u32 match udp dst 123 0xffff match 
ip protocol 17 0xff flowid 1:10

>>  Only thing I see is the high jitter (100+ ms) for external clocks; this
>>  is caused by the (partially!) used ADSL line (torrents).
>>
>>  The firewall labels the NTP traffic as low latency etc.
>>  Would a wondershaper have any extra benefit?
>
> If you can somehow enforce QoS or prioritize NTP, that will help.
>
> I run bittorrent on my ADSL (often near the full capacity of the line)
> with no ill effect on my scores, but I've also constructed my service
> classes carefully. NTP takes priority over nearly everything else
> (it's tied for 1st place with DNS) and has a guaranteed 10kbps
> (roughly 3 queries+responses per sec). Next comes interactive ssh and
> various chat protocols that I'd rather not have all laggy. After that
> comes bulk traffic like web, ftp, mail, and ssh without
> IPTOS_LOWDELAY. After all of that, any unclassified traffic, like
> bittorrent.


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