I solved the problem. This apparently works fine..and uses the .keystore that I am actually specifying in the server.xml.
See procedures below:
I created a new keystore file but this time I specified the directory to be saved in and not the default dir..
such as
C:\>keytool -genkey -alias myalias -keyalg RSA -keystore c:\.mykeystore
Enter keystore password: password
server.xml config as such:
<!-- Define a SSL Coyote HTTP/1.1 Connector on port 8443 -->
<Connector className="org.apache.coyote.tomcat4.CoyoteConnector"
port="443" minProcessors="5" maxProcessors="75"
enableLookups="true"
acceptCount="100" debug="0" scheme="https" secure="true"
useURIValidationHack="false" disableUploadTimeout="true">
<Factory className="org.apache.coyote.tomcat4.CoyoteServerSocketFactory"
clientAuth="false" protocol="TLS"
keystoreFile="C:\.mykeystore" keystorePass="password" />
</Connector>
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