For this we have a lot of solution, but the best I see is the "Trisquel Solution", as in : Use the same kernel (but the libre version) and change what is needed to change (and this can really be a hard work to do for a little team).

But something like the Parabola Gnu/Linux method is quite good.. you replace the repositories, and you add a new package that would make a "conflict" with non-free ones making them to be removed and not allowed to be installed after that and you have the problem solved for non-free software with the Distribution you love (and this until a new non-free software is out, like (once again) Parabola with the catalyst drivers).

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