Please be careful with the first link. If possible, refer to the Free
Software Directory or to a repository of a free system distribution.

Here is what I found in the Free Software Directory so far (besides
Moodle of course):

* RosarioSIS (this one is new to the directory, and has built-in Moodle
integration): http://directory.fsf.org/wiki/RosarioSIS 

* ILIAS: http://directory.fsf.org/wiki/Ilias

* Claroline: http://directory.fsf.org/wiki/Claroline

* TelEduc (developed at UNICAMP, a Brazilian university):
http://directory.fsf.org/wiki/TelEduc

* Manhali: http://directory.fsf.org/wiki/Manhali

* Manhattan Virtual Classroom:
http://directory.fsf.org/wiki/Manhattan_Virtual_Classroom

* WhiteBoard: http://directory.fsf.org/wiki/WhiteBoard

There are others in the directory, but they are
"crippleware" (free/libre with limited functionalities compared to the
editions with the same program name, from same proprietors (or people
endorsed by them) which has more functionalities and is considered
non-free unless proven otherwise). Besides, I'm currently waiting for
the opinions and voting of a proposal related to this issue with
"crippleware but free/libre".

The proposal is here:
http://directory.fsf.org/wiki/Free_Software_Directory_talk:Requirements

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