The problem with USB sticks or SD cards is that they have much shorter lifespans when you write a lot onto them. Non-journaling filesystems (as nadebula.1984 suggests) help... but bring their own risks of losing data, for instance in case of power cut during a write. If your hard disk is failing, the best is to acquire another one. They are rather cheap nowadays: ~50€ for a 1-TB HDD.

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