I am experiencing the same exact problem in Intrepid.

Ubuntu 8.10 Intrepid Ibex
Firefox 3.0.3+nobinonly-0ubuntu2

The problem seems to be related to the fact that the firefox binary in
ubuntu doesn't interpret the command line parameter --app but the
typical prism launcher uses it.

[EMAIL PROTECTED]:~$ /usr/lib/firefox-3.0.3/firefox --help
Usage: /usr/lib/firefox-3.0.3/firefox [ options ... ] [URL]
       where options include:

X11 options
        --display=DISPLAY               X display to use
        --sync          Make X calls synchronous
        --no-xshm               Don't use X shared memory extension
        --xim-preedit=STYLE
        --xim-status=STYLE
        --g-fatal-warnings              Make all warnings fatal

Mozilla options
        -height <value>         Set height of startup window to <value>.
        -h or -help             Print this message.
        -width <value>          Set width of startup window to <value>.
        -v or -version          Print Firefox version.
        -P <profile>            Start with <profile>.
        -ProfileManager         Start with ProfileManager.
        -no-remote              Open new instance, not a new window in running 
instance.
        -UILocale <locale>              Start with <locale> resources as UI 
Locale.
        -safe-mode              Disables extensions and themes for this session.
  -jsconsole           Open the Error console.

No --app there. But if you look at the launcher:
"/usr/lib/firefox-3.0.3/firefox" -app 
"/home/olivier/.mozilla/firefox/<censored>/extensions/[EMAIL 
PROTECTED]/prism/application.ini" -override "/home/olivier/.webapps/[EMAIL 
PROTECTED]/override.ini" -webapp [EMAIL PROTECTED]

Workaround:
xulrunner does take the --app parameter so I changed the 
"/usr/lib/firefox-3.0.3/firefox" from the launcher to /usr/bin/xulrunner and it 
worked! Yay!

Now, why is ubuntu's firefox not taking --app?

-- 
Prism extension not working on Firefox (-app flag)
https://bugs.launchpad.net/bugs/241787
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