I ran into this problem. I installed some Shiki-Colors themes, but hadn't installed the corresponding icon theme ahead of time. So I deleted those themes using the delete button in Appearances, installed the right icon themes and then tried re-installing the shiki themes. The same directory over directory error occurred. Using this thread http://ubuntuforums.org/showthread.php?t=1040277, I was able to correct the error. It seems the delete function from appearances doesn't delete the folders in your .themes folder in the home directory. Once you manually remove these folders, you can install the original theme again. A new theme was able to be installed correctly throughout this process for me.
-- Installation for theme "name_of_the_theme" failed. Can't move directory over directory https://bugs.launchpad.net/bugs/344343 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs