I was unable to confirm that a hang is caused by the scan disk feature
using a fresh install of Jaunty in VirtualBox.  When the disk scan ran
it indicated that it was running and gave an option to escape the scan.

Has the hang happened again or only the one time?  If it does happen
again, once Ubuntu loads post the output of 'cat dmesg'.

As for moving the disk scan to shutdown, you could create another report
dealing with this and have it triaged as 'Wishlist'.  I suggest that you
take a look at http://brainstorm.ubuntu.com/idea/11021/.

Thanks again for your report, if the problem reoccurs  please let us
know.

-- 
Silent disk scan on boot - computer seems to hang
https://bugs.launchpad.net/bugs/404874
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