Myriam:

Your comment is irrelevant here AFAICT: the settings in
/etc/security/limits.conf only affect things like login shells, ssh
sessions and the like. The original reporter is reporting *daemons*
running out of FDs, which are not affected (on first start-up) by the
settings you mention, since they're started from init. Daemons will only
be affected by those settings when they're restarted by someone logged
in from a login shell or similar.

-- 
CRON stacks processes and system eventually becomes unresponsive due to too 
many open files
https://bugs.launchpad.net/bugs/417025
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