Hi, I have exactly the same problem.
I found out that if I plug in a ethernet cable the wlan reconnects after some 
time.
( This is the only method to bring the wlan link back up apart from rebooting 
the system )


here is what dmesg says:
(notice that after I plugged in the ethernet cable, the wlan link went up only 
to go down again after a few seconds ) 

[ 2405.388135] CE: hpet increasing min_delta_ns to 15000 nsec
[ 2505.603373] gvfsd-metadata[5012]: segfault at 8 ip 0804d2ea sp bfb68b50 
error 4 in gvfsd-metadata[8048000+c000]
[ 2795.601043] CE: hpet increasing min_delta_ns to 22500 nsec
[ 2844.549242] cfg80211: Found new beacon on frequency: 5180 MHz (Ch 36) on phy0
[ 3815.392766] wlan0: deauthenticating by local choice (reason=3)
[ 3815.400875] usb 4-1: USB disconnect, address 2
[ 3815.401056] btusb_intr_complete: hci0 urb efa9e180 failed to resubmit (19)
[ 3815.401070] btusb_bulk_complete: hci0 urb efa9e500 failed to resubmit (19)
[ 3815.402067] btusb_bulk_complete: hci0 urb efa9ee80 failed to resubmit (19)
[ 3815.402216] btusb_send_frame: hci0 urb f5b7b700 submission failed
[ 3815.444010] iwl3945 0000:06:00.0: MAC is in deep sleep!.  CSR_GP_CNTRL = 
0x040003DD
[ 3975.000175] e100: eth0 NIC Link is Up 100 Mbps Full Duplex
[ 3975.000624] ADDRCONF(NETDEV_CHANGE): eth0: link becomes ready
[ 3985.724036] eth0: no IPv6 routers present
[ 4165.000334] usb 4-1: new full speed USB device using uhci_hcd and address 3
[ 4165.204466] usb 4-1: configuration #1 chosen from 1 choice
[ 4166.080523] Registered led device: iwl-phy0::radio
[ 4166.080552] Registered led device: iwl-phy0::assoc
[ 4166.080575] Registered led device: iwl-phy0::RX
[ 4166.080598] Registered led device: iwl-phy0::TX
[ 4166.094071] ADDRCONF(NETDEV_UP): wlan0: link is not ready
[ 4178.944525] wlan0: authenticate with AP 00:11:09:0d:15:93
[ 4178.948936] wlan0: authenticated
[ 4178.948940] wlan0: associate with AP 00:11:09:0d:15:93
[ 4178.952811] wlan0: RX AssocResp from 00:11:09:0d:15:93 (capab=0x431 status=0 
aid=1)
[ 4178.952816] wlan0: associated
[ 4178.955124] ADDRCONF(NETDEV_CHANGE): wlan0: link becomes ready
[ 4189.612019] wlan0: no IPv6 routers present
[ 4595.457092] wlan0: deauthenticating by local choice (reason=3)
[ 4595.533699] iwl3945 0000:06:00.0: MAC is in deep sleep!.  CSR_GP_CNTRL = 
0x040003DD
[ 4595.609104] usb 4-1: USB disconnect, address 3
[ 4595.609712] btusb_intr_complete: hci0 urb ef4f2400 failed to resubmit (19)
[ 4595.609730] btusb_bulk_complete: hci0 urb ef4f2c80 failed to resubmit (19)
[ 4595.610709] btusb_bulk_complete: hci0 urb ef4f2700 failed to resubmit (19)
[ 4595.610873] btusb_send_frame: hci0 urb ed245e00 submission failed


device is the same:
06:00.0 Network controller: Intel Corporation PRO/Wireless 3945ABG [Golan] 
Network Connection (rev 02)

-- 
ipw3945 disconnects randomly
https://bugs.launchpad.net/bugs/459978
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