Yeah, I had the same issue with the ntfsresize that is currently in
elive (debian lenny) ntfsprogs-2.0.0-1 -- I was not sure of the original
disk geometry, and /fixboot was not helping, so my solution was to
resize the partition again, and put it at the start of the disk.

It worked!  I would speculate that the partition start was not on a
cylinder boundary.  No combination of chkdsk and ntfsresize --force
--info would cause the fixboot task to succeed, until I tried this.

Unfortunately this is not enough.  It's my friend's computer, and she
really wanted to keep that recovery partition.  Does anyone know more
about this problem than we've exposed in this thread?  It only vaguely
resembles the issue from the FAQ, posted in 2004 about libparted-1.6.  I
was actually afraid this might happen, so I refrained from moving the
starting boundary of the partition at first.

Can you tell about what you did to copy the boot sector (dd? what
parameters) and where you put it so as to be sure that a) chainloader +1
will find it, and b) you're not writing somewhere that you shouldn't?

-- 
ntfsresize doesn't back up the boot sector
https://bugs.launchpad.net/bugs/324166
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