Could you provide the output of dmesg and lsmod when booting the Gnome
based installation (assuming the ones here are for the KDE based one)?

** Changed in: linux (Ubuntu)
   Importance: Undecided => Low

** Changed in: linux (Ubuntu)
       Status: New => Incomplete

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process ksoftirqd consuming 100% of CPU after booting Kubuntu
https://bugs.launchpad.net/bugs/512702
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