Tried and got the same result on the recent Karmic and Lucid kernels as well. 
My notebook unfortunately does not boot with a standard mainstream kernel, so I 
can not verify it.
Just to verify we understand each other, please look at the attached file. The 
home domain stemar.cz has been deliberately modified for this test in order to 
return a positive response for any request. As you can see, the dig returns 
NXDOMAIN for a.nonexistingdomain.com. The host command however continues with 
searching for a.nonexistingdomain.com.stemar.cz which is then successful. It 
should not be correct as a.nonexistingdomain.com contains more that ndots 
option dots. Unfortunately, the same way as the host command does any other 
apps (Firefox, Thunderbird, ping, etc.). From this I believe the problem is in 
the kernel resolver procedure.

** Attachment added: "resolv.txt"
   http://launchpadlibrarian.net/40969947/resolv.txt

-- 
Resolver ignores ndots option
https://bugs.launchpad.net/bugs/401202
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