Going on #20's suggestion above, I did a complete removal of the
"xserver-xorg-input-wacom" and "xserver-xorg-input-synaptics" packages
from my 10.04 system.  I can't be certain, as the problem has always
been intermittent for me, but it seems to have gone away.  My xorg.conf
file made no reference to wacom or synaptics, although I guess device
configuration is handled by Udev now; the relevant Udev files for wacom
and synaptics were of course removed when I removed the related
packages.

And just for reference, I updated from 9.10 to 10.04, but I first
encountered this problem in 9.10, for which I did a clean install.

-- 
Focus gets stuck to a window - impossible to select other windows
https://bugs.launchpad.net/bugs/362359
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