Hello 
I have posted a comment in December on the avidemux forum related to the same 
problem :
The problem, seen in version 2.5,  can be reproduced with avidemux 2.4 if you 
check the box
"use libavcodec MPEG-2 decoder" in the "input" tab of preferences,

So the problem is located in libavcodec.
Version 2.4 was using libmpeg2.
The point is that in 2.5 version, there is no possibility to uncheck the 
libavcadec MPEG-2 decoder ...

I would rise the importance of this bug since it forbids any treatment
of dvb-t streams (at least in France) using avidemux.

A workaround is to use mencoder to translate the avi file in mpeg file :
mencoder -oac copy -ovc copy -of mpeg -o my_file.mpeg my_file.avi
Then avidemux is happy despite the fact that in general sound and video are no 
more synchronous...

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Playback of MPEG2 files extremely choppy
https://bugs.launchpad.net/bugs/472352
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