Scott:

When I upgraded I could login correctly at first. It took a few days
before I was redirected to the new home directory. There was also a
package update in the meantime.

Could you check if the configuration files in /etc/likewise-open/ point
to %H/%D/%U after the upgrade too? Could it confuse a subsequent update
if they don't match the registry?.

-- 
Upgrading from likewise-open5 changes home directory locations
https://bugs.launchpad.net/bugs/568422
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