Ok, closing this bug after your last comment.
Could you open a new bug report for the error that you are experiencing now?
Please, fill it against a concrete package following the guidelines in
https://help.ubuntu.com/community/ReportingBugs
Thanks a lot!
** Changed in: ubuntu
Status: Incomplete => Invalid
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https://bugs.launchpad.net/bugs/501240
Title:
Program behaves differently when run from command line vs. run from makefile
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