I am not totally sure but unity 3.8.10 fixed a kind of similar issue,
Could you please update and check if that fixed your issue as well. see
bug 761409
** Changed in: unity
Status: New => Incomplete
** Changed in: unity (Ubuntu)
Status: New => Incomplete
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https://bugs.launchpad.net/bugs/766364
Title:
tray icons not clickable
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