Thank you and sorry I didn't reply right away. To quickly clear up the
situation:

I did manage to install the upgrade, it was just a matter of setting the 
permissions right.
/var/cache/apt/archives/ as well as /var/cache/apt/archives/partial/ did exist 
but the former had permissions 0700.

It seems the check for the "partial" directory happens before root
privileges are acquired. Update-manager should probably issue an error
message though or try with setuid root instead of failing silently.

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https://bugs.launchpad.net/bugs/772939

Title:
  Upgrade fails silently with missing directory permissions

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