Dear Harold,

we will soon upload samtools 0.1.16-1 to Debian, which will transiently
distribute sam.h in /usr/include.  We will later move it and all the
other headers to /usr/include/samtools.  (It is not possible to go
directly for /usr/include/samtools as we need to take care of not
touching libbio-samtools-perl during the transition to Perl 5.12 that
currently takes place in Debian.)

In addition, we are preparing a package for Cufflinks.  You can see its
development at the following URL.

http://git.debian.org/?p=debian-med/cufflinks.git

Have a nice day,

--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan

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https://bugs.launchpad.net/bugs/690997

Title:
  Would like package to include additional header files

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