I think it may also have something to do with the screen locking:  I had
my laptop sitting, screensaver disabled via the screen saver control
panel and in both the AC and battery profiles (the machine was running
on AC power at the time), and I was running the Transmission bittorrent
client.  I opened the screen after about 5 minutes of it being closed
(and it has been running continuously all day with me periodically
opening the lid to check email and whatnot), and though it seemed to be
responding, the mouse pointer and the whole screen seemed to flicker.
That is, until I entered my password as if to unlock the screen, and
then things went back to normal.

In a previous posting I made above I did notice a behavior similar to
this before when the screen flickered between the screen saver and the
lock screen.

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https://bugs.launchpad.net/bugs/762918

Title:
  Natty Screensaver freezes system after some period of inactivity

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