Could you check if you're running the latest version of Unity (3.8.14)?
I'm running 3.8.16 (which hasn't come to Natty yet) and I don't have
this issue with netbeans.
** Changed in: unity
Status: New => Incomplete
** Changed in: unity (Ubuntu)
Status: New => Incomplete
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https://bugs.launchpad.net/bugs/788101
Title:
unity launcher sometimes doesn't autohide while using netbeans
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