Its a bug in the way env variables are handled in gksu. It seems that
gksu doesn't pass on the UBUNTU_MENUPROXY env variable on to the
application, and hence the application doesn't display its menu in the
panel.

** Also affects: gksu (Ubuntu)
   Importance: Undecided
       Status: New

** Changed in: gksu (Ubuntu)
       Status: New => Confirmed

** Changed in: unity (Ubuntu)
       Status: New => Confirmed

** Changed in: unity
       Status: New => Confirmed

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https://bugs.launchpad.net/bugs/788404

Title:
  Menu merging with Ubnity top frame varies on User, sudo, or gksudo

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