I have reinstalled Ubuntu 11.04, but made sure I formatted my Home
partition too. Now Deja Dup is working fine exactly like it used too, my
daily backups run to the selected external drive with no errors. I know
it was a little overkill, but some config setting somewhere was
obviously causing all this bother. Some people have suggested dconf, but
I am unsure. For my part you can close the bug now.

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https://bugs.launchpad.net/bugs/748687

Title:
  Deja Dup does not remember local folder

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