After some studying it seems that grub2 is not responsible for this issue after 
all, but the /init phase in initramfs (or something like that I guess). That is 
because I can continue booting successfully after I run:
/sbin/vgchange -ay
in initramfs shell. I will change the question information in this respect.

So, the root cause seems to be that initramfs can't find root which is a
logical volume.

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https://bugs.launchpad.net/bugs/859064

Title:
  Unable to boot after installing 10.11 beta - vgchange needs to be run
  manually in initramfs shell

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