Running kernel 3.13.0-35-generic here.
I was affected by the same issue. Using "echo -1 
>/sys/module/usbcore/parameters/autosuspend" seemed to help a bit, although the 
reset entries "xHCI xhci_drop_endpoint called with disabled ep *******" were 
still there and system was blocking because of these continuous drops, leading 
to an unreliable (and incredibly slow) writing to the disk.

The best way to trigger the issue was for example to run an rsync
reading from one partition on the external disk and writing to another
partition on the same disk.

Plugging the disk with an USB 2.0 cable would show no problems at all
with same tests.

After plugging the external disk to a an USB port on the back, I can
confirm it works perfectly (and still in high speed mode, "new
SuperSpeed USB device number 2 using xhci_hcd").

Upon inspection, I found that the USB 3.0 cable connecting the front USB
ports to the motherboard was a bit loose at connecting the USB 3.0 part
of it. USB 2.0 traffic would always work perfectly fine but problems
would arise when estabilishing 3.0 links.

So, long story short, please check other USB 3.0 ports and that those
you are using are well connected. Although I was suspecting the PSU of
the external disk (12V 1.5A) and a bug in the kernel (as I read here and
elsewhere), in the end it was just a cable problem.

Hope it helps.

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https://bugs.launchpad.net/bugs/1371233

Title:
  USB 3.0 connection is unreliable + xHCI xhci_drop_endpoint called with
  disabled ep

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