I can confirm this on Ubuntu MATE 14.04 with gparted like the user
reported, and add to that that sometimes the freeze takes over the whole
desktop .  It freezes more like 20-25 seconds.

This is additional behavior:
https://bugs.launchpad.net/ubuntu/+source/gksu/+bug/1433854

Summary: gksudo commands can take up to about 15 seconds to complete.
While waiting, no other desktop actions can occur, and the screen does
not update until control is returned to the terminal.

It shares a little with this: 
https://bugs.launchpad.net/ubuntu/+source/gnome-panel/+bug/253504
But I'm not creating a launcher.

In the below output, the "Yeah, we're in..." is the last message before
everything freezes. Then there is the approximate 15 second delay, the
screen comes back and the last three lines of the output show.

rmadcow@msnbc:~$ gksudo --debug caja
No ask_pass set, using default!
xauth: /tmp/libgksu-chlcZO/.Xauthority
STARTUP_ID: gksudo/caja/4857-0-msnbc_TIME12647535
cmd[0]: /usr/bin/sudo
cmd[1]: -H
cmd[2]: -S
cmd[3]: -p
cmd[4]: GNOME_SUDO_PASS
cmd[5]: -u
cmd[6]: root
cmd[7]: --
cmd[8]: caja
buffer: -GNOME_SUDO_PASS-
brute force GNOME_SUDO_PASS ended...
Yeah, we're in...
xauth: /tmp/libgksu-chlcZO/.Xauthority
xauth_env: /home/rmadcow/.Xauthority
dir: /tmp/libgksu-chlcZO

System info:
System: Host: msnbc Kernel: 3.13.0-46-generic x86_64 (64 bit) Desktop: MATE 
1.8.2 Distro: Ubuntu 14.04 trusty
Machine: Mobo: MSI model: 790X-G45 (MS-7622) version: 1.0 Bios: American 
Megatrends version: V1.8 date: 03/02/2011
CPU: Quad core AMD Phenom II X4 965 (-MCP-) cache: 2048 KB flags: (lm nx sse 
sse2 sse3 sse4a svm)
Graphics: Card: Advanced Micro Devices [AMD/ATI] Cedar [Radeon HD 
5000/6000/7350/8350 Series]
           X.Org: 1.15.1 drivers: ati,radeon (unloaded: fbdev,vesa) Resolution: 
[email protected]
           GLX Renderer: Gallium 0.4 on AMD CEDAR GLX Version: 3.0 Mesa 10.1.3
Info: Processes: 178 Uptime: 3:45 Memory: 689.6/3953.0MB Client: Shell (bash) 
inxi: 1.9.17

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https://bugs.launchpad.net/bugs/349988

Title:
  Hangs for 10 seconds when starting an admin app.

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