What may be useful to a 3 year old bug report other than the log files?
The problem still exists on that computer. I added zram swap shortly
after this bug report and it helped some. Some. Using hugepages
currently and there times when it's easier to walk away and do something
else for 10 minutes while some i/o intensive cron job like mlocate
(since uninstalled) thrashes. Obscuring the problem is that some apt
update set the scheduler to "deadline" rather than "cfq" so ionice
values don't work. Forcing it back to "cfq" helps some - at least the
entire user interface isn't locked up for half an hour.

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https://bugs.launchpad.net/bugs/1013807

Title:
  transparent hugepages and thrashing on amd64

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