I have the same problem.

I will "fix" my system now by "making /var/run a symlink to /run." as
Steve suggested. Unfortunately "Ubuntu" has not been doing that for me
in my case. The two paths are separate directories. Only /run is a
tmpfs. /var/run is on the root filesystem.

System: Ubuntu 14.04.5 LTS

Originally "installed" in January 2015 by "pasting" (dd) a cloud-image
to the (Virtual Servers) hard disk.

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https://bugs.launchpad.net/bugs/1582958

Title:
  reboot-required.pkgs dose not clear after rebooting

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