Matthew Garrett is right, it seems NOT to be an Ubuntu issue. I managed
to get the *same* behaviour under GRUB. In BIOS or GRUB, the harddisk
makes "the click" only once, after that it's silent. That's because
noone is accessing the drive anymore. But in GRUB, you can browse the
filesystem. So if I list some directory, the harddisk audibly "loads"
and after a few seconds again "unloads". The difference is, under
Ubuntu, someone is always accessing the disk, therefore it unloads/loads
constantly over and over again. Windows must automatically set the APM
values to another values right after boot (or they might not be
accessing/probing the disk all the time, even when idle).

Therefore, the values which everyone complains about are really set from
the manufacturer. The question is if it's wrong. Some people may see
that unloading disk after 20sec of inactivity is a good thing (less
power(?), better security from fall). I can see that hdd manufacturers
can set this settings intentionally. The problem is that linux does not
allow the disk to stay in the unload mode for even a second. Maybe the
culprit is kernel or some program running in the background constantly
probing all devices. IF the harddisk stayed unloaded until some
read/write activity is needed, all this would be good behaviour.

So there are two problems:

1. Ubuntu is touching the disk all the time. The culprit must be found
(e.g. some logging daemons) and the behaviour has to be fixed to be more
appropriate for desktop/laptop users. Not only it would extend harddisk
life but also extend battery-time on laptops.

2. Until previous bug is fixed, Ubuntu should check for this kind of APM
values and tweak them a little bit not to destroy the harddisk in a few
months. This is clearly a linux problem (the disk should stay unloaded
for some time and it doesn't) so Ubuntu should provide some patch to
save customers disks until the whole linux-harddisk-thing is written
with more concern of desktop/laptop users and not only servers.


For those who didn't read carefully I sum up: The problem is not in the APM and 
disk unloading quickly, the problem is in the disk loading up right after 
unloading.

-- 
default value in power.sh potentially kills laptop disks
https://bugs.launchpad.net/bugs/59695
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