This looks like it's been fixed in debian with
https://launchpad.net/debian/+source/ca-certificates-java/20180413:
* Always generate a JKS keystore instead of using the default format
(Closes: #894979)
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https://bugs.launchpad.net/bugs/1743139
Title:
java.security.InvalidAlgorithmParameterException: the trustAnchors
parameter must be non-empty
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