On starting the program, it appears 
~/.local/share/qpdfview/qpdfview/database
is accessed as the file date/time stamp reflects this.

I then let it sit idle (~two mins, or clock minute has incremented
twice) before I start creating bookmarks, the timestamp doesn't alter
reflecting on program start

guiverc@d960-ubu2:/de2900/lubuntu_64$   file 
~/.local/share/qpdfview/qpdfview/database 
/home/guiverc/.local/share/qpdfview/qpdfview/database: SQLite 3.x database, 
last written using SQLite version 3031001

(this is the file I'd expect to change with creation of bookmarks,
however it appears empty using sqlitebrowser to view detail within it -
no records.  stat & `ls` were used to watch for changes on adding
bookmarks..)

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https://bugs.launchpad.net/bugs/1884943

Title:
  Bookmarks don't save

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