Hi,
I am not sure, who is looking into this, but I assume that if you can
provide a small XMI sample file, which produces this error it might help a
lot.
-- Mirko
btw.: is the annotation correct in the XMI?
well, I think at least the XMI is correct. At least it has all the info
I am expecting.
I added a demo xmi where the problem occurs. I found that the following
erros is thrown by the XCasAnnotationViewer:
-- snip ---
Exception occurred during event dispatching: CASRuntimeException: Trying
to access value of feature
de.julielab.jules.types.MeshHeading:descriptorNameMajorTopic" as feature
structure, but is primitive type.
--- snap ---
Someone told me, there might be problems with primitives. Actually, here
the feature "descriptorNameMajorTopic" is a Boolean. And the same error
occures with other types when there is a Boolean feature.
Any ideas how to solve this issue?
bye,
Katrin
On 1/15/07, Katrin Tomanek <[EMAIL PROTECTED]> wrote:
Hi,
I am using the XCasAnnotationViewer (uima SDK 2.0.2). Normally, it works
fine. However, some of my annotations it doesn't show for some reason.
In detail, when I open an annotated document (xmi-format) within the
viewer, I get a list of annotations below the document which I can
select. When I then click in the text on the colored annotations I can
see the annotation detail on the right.
But there are some of my annotations, which I -- though I can click on
them in the text -- cannot see in the right side of the window
(annotation details).
Does anybody know why this is ? Or what could be the error ?
Thanks in advance,
Katrin
--
Katrin Tomanek
Jena University Language and Information Engineering (JULIE) Lab
Phone: +49-3641-944307
Fax: +49-3641-944321
email: [EMAIL PROTECTED]
URL: http://www.coling.uni-jena.de
--
Katrin Tomanek
Jena University Language and Information Engineering (JULIE) Lab
Phone: +49-3641-944307
Fax: +49-3641-944321
email: [EMAIL PROTECTED]
URL: http://www.coling.uni-jena.de
<?xml version="1.0" encoding="UTF-8"?><xmi:XMI xmlns:pubmed="http:///de/julielab/jules/types/pubmed.ecore"; xmlns:cas="http:///uima/cas.ecore"; xmlns:types="http:///de/julielab/jules/types.ecore"; xmlns:tcas="http:///uima/tcas.ecore"; xmlns:xmi="http://www.omg.org/XMI"; xmi:version="2.0"><cas:NULL xmi:id="0"/><cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="IL-10 is a well-known immunosuppressive..."/><tcas:DocumentAnnotation xmi:id="8" sofa="1" begin="0" end="42" language="x-unspecified"/><pubmed:ManualDescriptor xmi:id="166" sofa="1" begin="0" end="42" meSHList="178" chemicalList="376"/><types:MeshHeading xmi:id="211" sofa="1" begin="0" end="42" descriptorName="Antigens, CD" qualifierName="analysis" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="222" sofa="1" begin="0" end="42" descriptorName="Antigens, CD14" qualifierName="analysis" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="233" sofa="1" begin="0" end="42" descriptorName="Antigens, Differentiation, Myelomonocytic" qualifierName="analysis" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="244" sofa="1" begin="0" end="42" descriptorName="Biological Transport" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="255" sofa="1" begin="0" end="42" descriptorName="Cell Adhesion" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="266" sofa="1" begin="0" end="42" descriptorName="Cells, Cultured" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="277" sofa="1" begin="0" end="42" descriptorName="Cytokines" qualifierName="biosynthesis" descriptorNameMajorTopic="false" qualifierNameMajorTopic="true"/><types:MeshHeading xmi:id="288" sofa="1" begin="0" end="42" descriptorName="Humans" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="299" sofa="1" begin="0" end="42" descriptorName="Interleukin-10" qualifierName="pharmacology" descriptorNameMajorTopic="false" qualifierNameMajorTopic="true"/><types:MeshHeading xmi:id="310" sofa="1" begin="0" end="42" descriptorName="Leukocytes, Mononuclear" qualifierName="metabolism" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="321" sofa="1" begin="0" end="42" descriptorName="Lipopolysaccharides" qualifierName="pharmacology" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="332" sofa="1" begin="0" end="42" descriptorName="NF-kappa B" qualifierName="metabolism" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="343" sofa="1" begin="0" end="42" descriptorName="RNA, Messenger" qualifierName="analysis" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="354" sofa="1" begin="0" end="42" descriptorName="Receptors, IgG" qualifierName="analysis" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:MeshHeading xmi:id="365" sofa="1" begin="0" end="42" descriptorName="Tumor Necrosis Factor-alpha" qualifierName="genetics" descriptorNameMajorTopic="false" qualifierNameMajorTopic="false"/><types:Chemical xmi:id="401" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Antigens, CD"/><types:Chemical xmi:id="410" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Antigens, CD14"/><types:Chemical xmi:id="419" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Antigens, Differentiation, Myelomonocytic"/><types:Chemical xmi:id="428" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="CD68 antigen, human"/><types:Chemical xmi:id="437" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Cytokines"/><types:Chemical xmi:id="446" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Lipopolysaccharides"/><types:Chemical xmi:id="455" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="NF-kappa B"/><types:Chemical xmi:id="464" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="RNA, Messenger"/><types:Chemical xmi:id="473" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Receptors, IgG"/><types:Chemical xmi:id="482" sofa="1" begin="0" end="42" RegistryNumber="0" NameOfSubstance="Tumor Necrosis Factor-alpha"/><types:Chemical xmi:id="491" sofa="1" begin="0" end="42" RegistryNumber="130068-27-8" NameOfSubstance="Interleukin-10"/><types:AuthorInfo xmi:id="33" sofa="1" begin="0" end="42" foreName="M" affiliation="Unité d'Immuno-Allergie, Institut Pasteur, 28 rue Dr Roux, 75015 Paris, France." lastName="Adib-Conquy"/><types:AuthorInfo xmi:id="50" sofa="1" begin="0" end="42" foreName="A F" lastName="Petit"/><types:AuthorInfo xmi:id="69" sofa="1" begin="0" end="42" foreName="C" lastName="Marie"/><types:AuthorInfo xmi:id="90" sofa="1" begin="0" end="42" foreName="C" lastName="Fitting"/><types:AuthorInfo xmi:id="113" sofa="1" begin="0" end="42" foreName="J M" lastName="Cavaillon"/><pubmed:Header xmi:id="13" sofa="1" begin="0" end="42" source="PubMed" docId="10330274" truncated="false" authors="131" pubTypeList="138" language="eng" citationStatus="MEDLINE"/><types:Journal xmi:id="153" sofa="1" begin="0" end="42" name="Journal Article" ISSN="0953-8178" volume="11" pubDate="143" title="International immunology. "/><types:Date xmi:id="143" sofa="1" begin="0" end="42" day="0" month="5" year="1999"/><cas:FSArray xmi:id="131" elements="33 50 69 90 113"/><cas:FSArray xmi:id="178" elements="0 211 0 222 0 233 0 244 0 255 0 266 0 277 0 288 0 299 0 310 0 321 0 332 0 343 0 354 0 365 0"/><cas:FSArray xmi:id="376" elements="0 401 0 410 0 419 0 428 0 437 0 446 0 455 0 464 0 473 0 482 0 491 0"/><cas:FSArray xmi:id="138" elements="0 153 0"/><cas:View sofa="1" members="8 166 211 222 233 244 255 266 277 288 299 310 321 332 343 354 365 401 410 419 428 437 446 455 464 473 482 491 33 50 69 90 113 13 153 143 131 131 178 376"/></xmi:XMI>
