Ahmed Abdeen(Home) wrote:
Hi Marshall,I actually sent my question there and I was told that those
files aren't there's to begin with. I was advised to check with uima-users
after I posted my question to the uima-developers list.
I think you would get these files from the universities mentioned. For
instance, for some of the missing files below, they have names like
Standford Parser, and there is a parser available for download from
http://nlp.stanford.edu/software/lex-parser.shtml which might be that
parser.
-Marshall
Thanks for your response anyways!
Ahmed
On Wed, Jun 11, 2008 at 3:23 PM, Marshall Schor <[EMAIL PROTECTED]> wrote:
Hello, Ahmed -
I think this question is best directed to the bioNLP group.
It looks like the build script is not finding many different classes.
Perhaps there is a "readme" in the distribution you got which gives
instructions on obtaining other Jars from places like Stanford (the import
of "edu.stanford.nlp. . ." implies this may be coming from Standford
university).
-Marshall
Ahmed Abdeen(Home) wrote:
Apologies from cross-listing!
Hello,I am trying to compile bioNLP UIMA tools but I am getting the
following errors:
Buildfile: build.xml
compile:
[javac] Compiling 161 source files to
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/build/classes
[javac]
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/stanfordparser/StanfordParser_Util.java:48:
cannot find symbol
[javac] symbol : class TypedDependencyList
[javac] location: package edu.stanford.nlp.trees
[javac] import edu.stanford.nlp.trees.TypedDependencyList;
[javac] ^
[javac]
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/stanfordparser/StanfordParser_Util.java:418:
cannot find symbol
[javac] symbol : class TypedDependencyList
[javac] location: class
edu.uchsc.ccp.util.external.stanfordparser.StanfordParser_Util
[javac] TypedDependencyList tdl = gs.typedDependencies();
[javac] ^
[javac]
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/penn/PennBioTokenizer_Util.java:49:
cannot find symbol
[javac] symbol : constructor BioTokenizer(java.lang.String)
[javac] location: class edu.upenn.cis.tokenizers.BioTokenizer
[javac] bt = new BioTokenizer(tokenizerModelFile);
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 3 errors
BUILD FAILED
If you have had experience with bioNLP UIMA and got it to compile, please
let me know. I could use some help.
Thanks in advance!
Ahmed
