I think I know what this is. When you compile ffmpeg you need to have /usr/gnu/bin as the first search path and ensure that /usr/gnu/bin/sed exists. There is a function in the configure script for ffmpeg called find_things() that uses a complex sed argument that doesn't work with /usr/bin/sed. If the output from the ffmpeg configure says there are no decoders enabled, then this is your problem. I also had to add /usr/ucb to the front of PATH for the "make install" part to ffmpeg. This is so it could find /usr/ucb/install, other install scripts didn't seem to work.
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