File::BOM is supplied with LMS, the system-wide version should not be used. You should uninstall the one which you installed with CPAN (actually, installing with CPAN is a really bad idea in any case if you use the default perl supplied with Ubuntu - always use Ubuntu's package management instead if you need a perl module). Additionally, I think File::BOM isn't the problem anyway - the error comes from perl's Encode module (that's why using the .tar.gz LMS won't help) , and seems Unicode-related. Make sure your system and perl are Unicode-aware. For testing purposes, try commenting out the offending line(s) in File::BOM ( lines 189-192, start with the first only, it might be safe to comment out all encodings except for UTF-8)
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