How is that custom thread triggered currently? At startup? If so, you should be 
able to trigger your scheduled task (as one time op only) in module startup and 
have functionality in command. Granted that command will not be useful anywhere 
else and you are using it only to have something that Scheduler can invoke but 
it should take care of opening/closing session for you.

-- 
Context is everything: 
http://forum.magnolia-cms.com/forum/thread.html?threadId=eb651c45-7ca3-48bf-b926-87c054a35d4f


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