You would need to get a UMLS license to get the full functionality. It takes 2-3 days to be approved for it. Hope this helps. --Guergana
From: Rooney, Niall [mailto:[email protected]] Sent: Friday, April 12, 2013 10:26 AM To: [email protected] Subject: RE: concept identification query Pei, I don't have a UMLS license yet but thanks for looking into this. From: Chen, Pei [mailto:[email protected]] Sent: 12 April 2013 15:10 To: <[email protected]> Subject: Re: concept identification query Thanks Tim for confirming... AggregatePlaintextUMLSProcessor.xmlshould pick up stomach and aphasia etc. Sent from my iPhone On Apr 12, 2013, at 9:25 AM, "Tim Miller" <[email protected]<mailto:[email protected]>> wrote: Niall, I'm sure Pei will get back to you soon, but just wanted to let you know, many of those entities will be found by the standard ctakes installation. I get aphasia and stomach. It does not get blood pressure, I think because this is filtered out by UMLS semantic class - I think it is categorized as a "measurement," and cTAKES will find things like disease/disorder, signs/symptoms, and a few others, which this does not fit into exactly. It may be worth thinking about how to include it if it will be useful. In this example it looks like it's linked to some assessment "HB +20%", I assume that is some measurement that would be useful to extract? Tim On 04/12/2013 07:05 AM, Rooney, Niall wrote: Hi, I have question concerning concept identification. I have modifying the example text given in the installation instructions to demonstrate the use of CAS Visual Debugger. My text is: Dr. Nutritious Medical Nutrition Therapy for Hyperlipidemia and Aphasia Referral from: Julie Tester, RD, LD, CNSD Phone contact: (555) 555-1212 Height: 144 cm Current Weight: 45 kg Date of current weight: 02-29-2001 Admit Weight: 53 kg BMI: 18 kg/m2 Diet: General Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activity and blood pressure. Daily Protein needs: 40 grams, assessed as 1.0 g/kg. Pt has been on a 3-day calorie count and has had an average intake of 1100 calories. She was instructed to drink 2-3 cans of liquid supplement to help promote weight gain. She agrees with the plan and has my number for further assessment. May want a Metabolic Rate as well. She takes Codeine a day for knee and stomach pain. Original entities and concepts are identified such as "Hyperlidemia" , "knee","pain". However concepts associated with addition to the text are not identified such as "Aphasia", "blood pressure", "stomach". Also "metabolic rate" is not identified. 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